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Stage
Gene Name
GEISHA ID
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gene name or description
anatomical location
stage
GEISHA ID
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Ensembl ID
NCBI ID
GO description
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Chicken Stage Series
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
Cf106, C6orf106
ENSGALG00000002778
419902
go
go
EHF
ENSGALG00000007817
425791
go
ELF1
ENSGALG00000016947
418828
go
go
ELF2
ENSGALG00000009774
422439
go
go
ELF3
ENSGALG00000000616
421177
go
ELF5
ENSGALG00000007811
428859
go
ELK3
ENSGALG00000011435
417919
go
go
ELK4
ENSGALG00000000701
419832
go
go
ERF, ETV3
ENSGALG00000000669
426718
go
ERG
ENSGALG00000016058
374146
go
go
ETS1b, TNIP1
ENSGALG00000001143
396235
go
go
ETS2
ENSGALG00000016059
396250
go
ETV1
ENSGALG00000010780
395748
go
go
go
ETV4
ENSGALG00000001188
395747
go
go
ETV5
ENSGALG00000005768
395749
go
go
ETV6
ENSGALG00000012921
395750
go
go
ETV7
ENSGALG00000000504
419813
go
FLI1
ENSGALG00000001161
419723
go
go
go
GABP
ENSGALG00000015763
418478
go
go
SPDEF
ENSGALG00000002792
428271
go
SPI1
ENSGALG00000008127
395879
go
go
SPIC
ENSGALG00000012786
427915
go
22 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
GATA1 eryf1
396450
GATA2
ENSGALG00000005909
416018
go
go
go
GATA3
ENSGALG00000006726
419106
go
go
GATA4
ENSGALG00000016662
396392
go
go
go
GATA5
ENSGALG00000005352
396391
go
go
go
GATA6
ENSGALG00000014976
396390
go
go
go
GATAD1
ENSGALG00000009399
420551
go
GATAD2A
ENSGALG00000002928
420109
go
GATAD2B
ENSGALG00000018607
426098
9 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
ERCC3
ENSGALG00000011515
424226
GTF2A1
ENSGALG00000010576
423389
go
go
GTF2A1L
ENSGALG00000009092
421307
go
GF2A2
ENSGALG00000003793
770910
go
GTF2B
ENSGALG00000006205
424518
go
GTF2E1
ENSGALG00000014947
418328
go
GTF2E2
ENSGALG00000002060
417522
go
go
go
GTF2E3
ENSGALG00000010283
771227
GTF2F2
ENSGALG00000016974
418843
go
GTF2H
ENSGALG00000002399
GTF2H1
ENSGALG00000006281
423081
go
go
GTF2H3
ENSGALG00000023682
771837
go
go
GTF2H4
ENSGALG00000008616
417256
go
go
GTF2H5
ENSGALG00000013733
769754
GTF2I
ENSGALG00000021665
417486
go
GTF2IRD1
ENSGALG00000001263
417487
go
GTF3A
ENSGALG00000017098
418931
go
go
GTF3C1
ENSGALG00000007387
427094
go
GTF3C2
430980
go
GTF3C3
ENSGALG00000007958
424052
GTF3C4
ENSGALG00000018748
417167
GTF3C5
ENSGALG00000003441
417164
go
GTF3C6
ENSGALG00000015044
421754
TBP
ENSGALG00000011171
395995
go
TCEA1
421119
go
25 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
ADNP [from human gene ENSG00000101126]
ENSGALG00000007989
419350
ADNP2 ZNF508
ENSGALG00000012634
420805
go
go
go
ALX1
ENSGALG00000011144
427871
go
ALX4
ENSGALG00000008024
373976
go
ARX
772262
go
go
BAPX1 [from human gene ENSG00000109705]
ENSGALG00000017391
BARHL1
429598
go
BARHL2 [from human gene ENSG00000143032]
ENSGALG00000017377
Barx1
ENSGALG00000005131
374017
go
go
BARX2
ENSGALG00000001197
395714
go
go
BSX
ENSGALG00000006515
395183
CDX1
ENSGALG00000005679
395397
go
go
CDX2 [from human gene ENSG00000165556]
ENSGALG00000017094
374205
go
go
CDX4 [from human gene ENSG00000131264]
ENSGALG00000007656
395320
go
go
go
CNOT2
ENSGALG00000010588
396117
CUTL1 CUX1
ENSGALG00000001807
396358
go
CUTL2 CUX2
ENSGALG00000004598
416875
go
DBX1
ENSGALG00000003965
422976
go
go
DBX2
PREDICTED: Gallus gallus similar to Homeobox protein DBX1 (CHoxE), mRNA
417801
go
go
DLX1 [from human gene ENSG00000144355]
ENSGALG00000018439
429283
go
go
DLX2 [from human gene ENSG00000115844]
ENSGALG00000009363
go
go
go
DLX3 NP_990135.1
ENSGALG00000006940
395590
go
go
go
DLX5
ENSGALG00000009129
373969
go
go
DLX6
ENSGALG00000023195
772070
go
go
DMBX1
ENSGALG00000010436
395271
go
go
DRGX
ENSGALG00000006224
771373
go
EMX1 [from human gene ENSG00000135638]
ENSGALG00000016095
768977
go
go
EMX2 [from human gene ENSG00000170370]
ENSGALG00000009302
423923
go
go
EN1
ENSGALG00000012120
429046
go
En2
ENSGALG00000023430
go
EVX1 [from human gene ENSG00000106038]
ENSGALG00000011077
428434
go
go
go
EVX2 [from human gene ENSG00000174279]
ENSGALG00000020768
771375
go
go
GBX1
395377
go
go
GBX2
ENSGALG00000013342
395950
go
go
go
GSC
ENSGALG00000010974
396273
go
GSC2
ENSGALG00000005865
427702
go
HDX
ENSGALG00000007041
422272
HESX1 GANF
ENSGALG00000005506
395864
go
go
HHEX_CHICK
ENSGALG00000006778
396182
go
go
go
HMBOX1
ENSGALG00000016633
go
HMD2_CHICK
ENSGALG00000007657
HMX1
ENSGALG00000015600
396546
go
HMX2
ENSGALG00000023414
768405
go
HMX3 NKX5.1
ENSGALG00000023415
429199
go
HNF1A
ENSGALG00000006968
416967
go
go
HNF1B
ENSGALG00000005504
427838
go
go
go
HOP_CHICK
ENSGALG00000011404
395241
go
go
HUNK
ENSGALG00000015879
418493
IRX1 NP_001025509.1
ENSGALG00000013194
374185
go
go
IRX2 NP_001025507.1
ENSGALG00000013193
373975
go
go
IRX3
ENSGALG00000022896
408181
go
go
go
IRX4
ENSGALG00000023738
373974
go
go
IRX5 [from human gene ENSG00000176842]
ENSGALG00000003588
374184
go
go
ISL1 [from human gene ENSG00000016082]
ENSGALG00000014884
396383
go
ISX
ENSGALG00000012557
418060
go
LASS3
ENSGALG00000014624
LASS4 [from human gene ENSG00000090661]
ENSGALG00000000307
LASS5 [from human gene ENSG00000139624]
ENSGALG00000006184
go
LASS6 [from human gene ENSG00000172292]
ENSGALG00000010902
LBX1
431414
go
go
LHX1
ENSGALG00000005409
396381
go
go
go
LHX2
ENSGALG00000001124
395705
go
go
LHX3
ENSGALG00000003928
373940
go
go
LHX4
ENSGALG00000001735
776024
go
LHX5
ENSGALG00000008303
771259
go
go
LHX6
ENSGALG00000001347
772259
go
go
LHX8
ENSGALG00000011369
424721
go
go
LHX9
ENSGALG00000002223
396397
go
go
LMX1A
ENSGALG00000003424
770713
go
LMX1B
ENSGALG00000000936
396312
go
go
LOC428318
ENSGALG00000000406
LOC428735
428735
LOC430081
430081
LOC430437
430437
LOC770725
770725
LOC770853
770853
LOC772093
ENSGALG00000013446
LOC777133
777133
MEIS1 [from human gene ENSG00000143995]
ENSGALG00000008774
769821
go
MEIS2
395588
go
go
MEOX1
ENSGALG00000001191
395533
go
go
MEOX2
ENSGALG00000010794
374137
go
MIXL1
ENSGALG00000023456
395838
go
MKX
ENSGALG00000007426
771284
go
MNX1
ENSGALG00000006438
395768
go
go
MSX1 HMGX7
ENSGALG00000015013
396484
go
go
go
MSX2
ENSGALG00000002947
395245
go
go
NANOG
100272166
go
NBEAL1
ENSGALG00000008786
NEW ENTRY
399507
NKX1-1
ENSGALG00000023406
771636
NKX2-1
ENSGALG00000020423
395322
go
go
NKX2-2 [from human gene ENSG00000125820]
ENSGALG00000008366
428549
go
NKX2-3
395888
go
NKX2-5
ENSGALG00000002886
go
go
NKX2-6
ENSGALG00000000365
396037
go
NKX3-2
373932
go
go
NKX-6.1
395752
go
NKX6-2 Q9PTK0_CHICK
ENSGALG00000010500
395591
NKX6-3
ENSGALG00000018503
go
go
NOBOX O60393_HUMAN
ENSGALG00000019041
novel
ENSGALG00000022532
NP_990077.1
ENSGALG00000003429
NP_990134.1 MEIS1
ENSGALG00000009799
ONECUT1 [from human gene ENSG00000169856]
ENSGALG00000004551
go
go
Otx2
ENSGALG00000020352
395191
go
go
PBX1
395505
go
go
go
PBX4
ENSGALG00000013419
426087
go
pdx1
ENSGALG00000022726
771348
go
go
PHOX2B
ENSGALG00000014250
395548
go
go
PHTF1 [from human gene ENSG00000116793]
ENSGALG00000001845
PiTX1
ENSGALG00000006365
go
PITX2_CHICK
ENSGALG00000012086
go
PITX3 [from human gene ENSG00000107859]
ENSGALG00000005613
go
PKNOX1
ENSGALG00000016191
418542
go
go
PKNOX2
ENSGALG00000000316
374067
go
go
POU1F1
ENSGALG00000015495
374215
go
POU2F1 OCT1
ENSGALG00000015446
396463
go
go
POU2F3
428240
go
POU3F1
430270
go
go
POU4F2
ENSGALG00000010008
374085
go
POU4F3
395521
go
POU6F2
ENSGALG00000012303
420763
go
POUV OCT4
427781
PROP1
374220
PROX1
ENSGALG00000009791
395802
go
PRRX1
ENSGALG00000003324
373941
go
PRRX2
ENSGALG00000004229
396314
go
Q90765_CHICK CASP
ENSGALG00000021636
Q9I9A0_CHICK PHOX2
ENSGALG00000014250
Q9W6V3_CHICK Six4
ENSGALG00000017389
Q9YHC2_CHICK
ENSGALG00000011223
RX1 RAX
ENSGALG00000013431
373893
go
go
RCJMB04 6b10
ENSGALG00000000972
417093
SATB1 [from human gene ENSG00000182568]
ENSGALG00000011254
420647
go
SATB2 [from human gene ENSG00000119042]
ENSGALG00000008135
424063
go
SEBOX
417567
go
SERPINF1
ENSGALG00000003015
SHOX [from human gene ENSG00000185960]
ENSGALG00000016698
418669
SHOX2
771650
go
go
SIX1
ENSGALG00000022994
693262
go
go
SIX2
724086
go
go
SIX3
378786
go
go
SIX4
395601
go
go
SIX6_CHICK
ENSGALG00000020359
395843
go
SOHO-1
ENSGALG00000015599
396346
TGIF1 AKR_CHICK
ENSGALG00000014795
396339
go
go
go
TLX1
ENSGALG00000007831
395868
go
go
TLX3
ENSGALG00000002191
395867
go
go
go
TPRXL
ENSGALG00000008900
424547
TSHZ1
ENSGALG00000013672
428513
go
TSHZ2
ENSGALG00000007809
419341
go
TSHZ3
ENSGALG00000004528
415762
UNCX
ENSGALG00000019025
416458
go
VAX1
ENSGALG00000009261
395582
go
go
VENTX
ENSGALG00000022109
430089
go
VSX1_CHICK
ENSGALG00000008765
395537
VSX2 CHX10
ENSGALG00000010213
395536
go
go
ZEB1
ENSGALG00000007260
396029
go
ZEB2
ENSGALG00000012440
424306
go
go
ZFHX3
ENSGALG00000000713
395682
go
ZFHX4
ENSGALG00000015673
395904
go
ZHX1
ENSGALG00000016378
go
ZHX2
ENSGALG00000016390
go
164 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
HOXA1
ENSGALG00000009267
771094
go
go
HOXA2
396055
go
HOXA2 or HoxA1
ENSGALG00000011053
374051
HOXA3
ENSGALG00000011054
395231
go
HOXA4
ENSGALG00000011055
395307
go
HOXA6
ENSGALG00000011059
420630
go
HOXA7
ENSGALG00000011061
395290
go
HOXA9
ENSGALG00000019640
396096
go
HoxA10
ENSGALG00000023132
776143
go
HOXA11
ENSGALG00000023130
395327
go
HOXA13
ENSGALG00000023129
373934
go
HOXB1
ENSGALG00000013454
395900
go
HOXB2
429940
go
HOXB3
ENSGALG00000013455
395502
go
go
HOXB4
ENSGALG00000022622
396230
go
HOXB5
ENSGALG00000002996
425096
go
HOXB7
ENSGALG00000013215
425962
go
HOXB8
ENSGALG00000017353
395737
go
HOXB9 [from human gene ENSG00000170689]
ENSGALG00000001276
771865
go
HOXB13
ENSGALG00000001543
771676
go
HOXC6
Gallus gallus partial mRNA for HOXC-6
go
HOXC8
PREDICTED: Gallus gallus homeobox C8 (HOXC8), mRNA
395711
go
HOXC9
ENSGALG00000011640
425723
go
HOXC10
430550
go
HOXC10 or D10?
ENSGALG00000018783
770471
HoxC11
ENSGALG00000014091
430698
go
HOXC12
ENSGALG00000018427
429400
go
HoxC13
ENSGALG00000010923
771955
go
HOXD3
ENSGALG00000023420
431212
go
HOXD4
ENSGALG00000023419
424139
go
go
HOXD8
ENSGALG00000009270
396301
go
HOXD9
771214
go
HOXD10
771246
go
HOXD11
ENSGALG00000009273
395328
go
HOXD12
ENSGALG00000009274
396178
go
HOXD13
ENSGALG00000009277
396415
go
HOXE_CHICK
ENSGALG00000009604
37 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
HSF1
420362
go
go
HSF2
ENSGALG00000014870
421724
go
go
go
sim to HSF2
776528
HSF3
ENSGALG00000004644
422169
HSF4
ENSGALG00000003224
427540
go
HSF5
ENSGALG00000001031
417471
HSFY1 [from human gene ENSG00000172468]
ENSGALG00000019266
418222
7 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
IRF1
ENSGALG00000006785
396384
go
IRF2
ENSGALG00000010642
396384
go
go
IRF4
ENSGALG00000012830
374179
go
go
IRF5
ENSGALG00000013216
430409
go
go
go
IRF6
ENSGALG00000001405
419863
go
go
IRF7
ENSGALG00000014297
396330
go
go
IRF8
ENSGALG00000005757
396385
go
IRF10
ENSGALG00000006448
395243
go
8 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
NFKB1_CHICK
ENSGALG00000012304
396033
go
NFKB2_CHICK
ENSGALG00000005653
go
go
NFKBIE
ENSGALG00000010171
go
REL_CHICK
ENSGALG00000007845
396500
go
go
4 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
Pax2
ENSGALG00000005689
395574
go
go
PAX3 (HUP2)
ENSGALG00000005246
374127
go
go
go
Pax5
ENSGALG00000016431
387330
go
go
PAX6_CHICK
ENSGALG00000012123
395943
go
go
PAX7
ENSGALG00000003782
395942
go
go
go
PAX9
ENSGALG00000010114
395740
go
go
go
PAXIP1
ENSGALG00000006336
420441
go
go
PRRX1
ENSGALG00000003324
373941
go
go
8 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
Q9I9L8_CHICK SMAD1
ENSGALG00000009977
395680
go
go
SMAD2
ENSGALG00000010056
395247
go
go
SMAD2, Q9I9P2_CHICK
ENSGALG00000014184
NP_989892.1 SMAD2
ENSGALG00000014697
SMAD3
ENSGALG00000007870
395132
go
go
SMAD5 NP_001014968.1
ENSGALG00000006309
395679
go
go
SMAD6
ENSGALG00000007865
374096
go
go
AGGF1 [from human gene ENSG00000164252]
ENSGALG00000004311
416364
go
SMAD8 SMAD9
ENSGALG00000017050
395543
go
go
9 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
Sox1
ENSGALG00000007243
374240
go
go
Sox2
ENSGALG00000008848
396105
go
go
go
Sox3
ENSGALG00000007243
374019
go
go
go
Sox4
ENSGALG00000016397
395143
go
go
Sox5
ENSGALG00000013204
418195
go
go
Sox6
ENSGALG00000006074
423068
go
go
Sox7
ENSGALG00000016644
771337
go
go
Sox8
ENSGALG00000005263
395483
go
go
Sox9
ENSGALG00000004386
374148
go
go
Sox10
ENSGALG00000012290
395573
go
go
go
Sox11
ENSGALG00000016397
396104
go
go
go
Sox13
ENSGALG00000000583
419820
go
go
Sox14
ENSGALG00000017372
395526
go
go
Sox17
ENSGALG00000022832
428534
go
go
go
Sox18
ENSGALG00000005984
374200
go
go
Sox30/21
ENSGALG00000003723
416243
go
go
go
16 genes
gene name
ensembl id
ncbi gene id
GEISHA
zebrafish
xenopus
mouse
tbox2
ENSGALG00000023577
373990
go
go
go
tbox3
ENSGALG00000008250
374202
go
go
go
tbox4
ENSGALG00000005285
373989
go
tbox5
ENSGALG00000008253
373988
go
go
BRAC_chick
ENSGALG00000011489
395782
go
tbx6L_chick (tbox16)
ENSGALG00000006374
395792
go
go
tbox10
ENSGALG00000003599
428814
go
sim to tbx15-1
776679
sim to tbx15-2
769418
tbox15
ENSGALG00000014776
418313
go
go
tbox18
ENSGALG00000015834
395104
go
go
TBXT (TBX19)
ENSGALG00000015244
395793
go
TBX20
ENSGALG00000012151
373943
go
go
tbox21 EOMES
ENSGALG00000011424
428443
go
TBX22
ENSGALG00000004093
373895
go
t-box brain 1
ENSGALG00000011122
429029
go
MGA
ENSGALG00000008653
423220
go
17 genes
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