GEISHA - A Chicken Embryo Gene Expression Database
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SNX30
sorting nexin family member 30

Gene
Official SymbolSNX30
Official Full Namesorting nexin family member 30
CGNC ID11678
also known assorting nexin-30, Sorting nexin family member 30
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_424910
PolypeptideXP_424910
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.11940
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human401548ENSG00000148158
Mouse209131ENSMUSG00000028385MGI:2443882
Xenopus549659, 734574944716
Zebrafish550496ENSDARG00000069601ZDB-GENE-050417-330ZFIN:ZDB-GENE-050417-330
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene427330
Ensembl GeneENSGALG00000015660
KEGGgga:427330

Entry 1

GEISHA IdN17Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GAGATGACTTCCTGCCGGTGCTTAGGGAATATATACTGTATTCTGAGTCAATGAAGAATGTGTTGAAGAAGAGAGACCA
AGTTCAAGCAGAGTATGAAGCAAAACTGGAAGCAGTAGCCTTGAAAAAAGAAGACCGTCCAAAGGTACCTACAGATGTT
GAGAAATGTCAAGACCGAGTAGAATGTTTTAACGCTGATCTGAAAGCAGATATGGAGAGATGGCAGAACAATAAGCGAC
AAGACTTTAGGCAGCTACTCATGGGAATGGCAGATAAAAACATCCAGTACTACGAGAAGTGCCTTACAGCATGGGAGTC
AATTATACCACTATTGCAAGACAAGCCAGAGACCAAATAAGAAGTACCTTCATGGACAGTCTAGCACTTCTGTGCTCAG
TACCACTAGACATACTGGAACTCTATGAAGGTCTCTTTTTTTTTTTTTTTGTCAACTGAGATGCCAGCTGTGCTCAGGC
TGGAACAGACCCTCTGAAGACTATTTGACTTTTTTCCTCATTTTCTTTGTAAACTGGGGTATGTTTCATCTTTTTGAGG
TATCTTGAATGGTTCCTTCTCTATCCTATGGAGTGACATGGGGCTTATAGT
Reverse cDNA Template Probeshow
GGGGGCCCCCCCCCCTAAATGGGAAAAAATAAATTTTTTGAAAAAAAAAATTTTAATAAACCCCAAACTTTTTTTTTTA
GAAACCCCCCAGGGGTTTTTTCCCAAAGGGGGCCCCTTTGGGGGGCCCCCAAAAAGGGGTCAAAAAGGGGGCCCCCCCC
TCCTTGACCCCCCAAAAAAAAGGCCCTTTTCCCCCCCCCCTTGGGGGGCCCCCCCCCCTTTTTTTTTTCCCCCCCCCCC
CAAAGGGTTTTTAAAAAAAAAAAAATTCCCCCCGGTGGGGGGGTCCCCCCCCAACCCCCCAAAAAGTTTTTTTTTTTTT
TTCAGGGGGCCCCCCCCAAAAAAAAAACCCCCGAAAATTTTTTTTTTTTTCCCCAAAAAAAACCCCCCCTTTTTTTAAA
AATTTTTTTTCGGGGGGGGCCCTTTCCAAAAAAAAATTTTTTAAAACCTCCCGGGGTTTTTTGGGGGCCCCCTTAAAAA
AAAAGTGGGGGTTAACGTTCCCCCCCAAAAATTTTCCAAAAAAAAAACGTGGGTTTTTTTCAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
stage 10
stage 11
stage 12
Head Process
Heart
Notochord
 
13-18
stage 13
stage 14
stage 14
stage 14
stage 16
stage 16
stage 17
Heart
Heart Tube
Hindbrain
Midbrain
Notochord
 
19
stage 19
stage 19
stage 19
Head Process
Heart
Hindbrain
Midbrain
Notochord
floor plate

Entry 2

GEISHA IdSNX30.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTCTCAGTCTACCCAATGGCACAC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGGGACGGTCTTCTTTTTTCAAGGCcDNA Template Length936
Complete cDNA Template Probeshow
ATGTCGGGCGGCGCGGCGGGCATTCCTAAACCTCTCCCGTCCTCCGGGCCCAAATCGCTGCGGGAGATGCCGCATCCTC
TGGCCACCTCCAGCAGCGAGGAGATGGGGCCGGCTCTCACCCCCAGCCCCGACCTGCTGCTGCCCCGCAGCATCGCCGA
CAAGGATCTCAGTCTACCCAATGGCACACCAGTTGACACTTCTAGCCCAGCCTCCTCCTCATCTCTTCTCAACAGACTG
CAGCTGGATGATGACTTGGATGGGGAAACAAAAGACTTGTTCGTTACTGTTGATGATCCCAAAAAGCACGTATGCACAA
TGGAGACTTACATCACGTATAGGGTTACAACAAAGACTACCCGAGCTGAATTTGATTTGCCAGAGTATTCTGTTCGCCG
GCGGTACCAAGACTTTGACTGGTTGAGAAACAAGCTGGAAGAGTCTCAGCCAACACATCTCATTCCCCCGCTTCCTGAG
AAATTTGTGGTGAAGGGTGTTGTTGATCGCTTTTCTGAAGAGTTTGTGGAGACCAGGAGGAAAGCATTAGACAAATTCT
TGAAGAGAATAACTGATCATCCAGTGCTTTCTTTCAATGAGCATTTCAACGTATTTCTCACAGCCAAGGATCTTAATGC
ATACAAAAAGCAAGGAATGGCATTGCTGTCAAAGATGGGGGAGTCAGTTAAATATGTCACAGGAGGTTACAAATTAAGA
AGTCGTCCACTGGAGTTTGCAGCCATTGGAGAGTATCTGGACACATTCTCTCTAAAACTTGGTACCATTGACAGGATAG
CACAACGGATTATCAAGGAACAGTTGGAATACTTGGTGGAATTACGAGAATATGGACCTATTTATTCAACCTGGGGCGG
GCTGGAGGTTGAGCTGTCAGAGCCTCTGGAAGGGGTGTCTGCATGCATTGGAAACTGCTGCACAGCTCTTGAAGAACTT
AGTGAAGATATGACAGATGACTTCCTGCCGGTGCTTAGGGAATATATACTGTATTCTGAGTCAATGAAGAATGTGTTGA
AGAAGAGAGACCAAGTTCAAGCAGAGTATGAAGCAAAACTGGAAGCAGTAGCCTTGAAAAAAGAAGACCGTCCAAAGGT
ACCTACAGATGTTGAGAAATGTCAAGACCGAGTAGAATGTTTTAACGCTGATCTGAAAGCAGATATGGAGAGATGGCAG
AACAATAAGCGACAAGACTTTAGGCAGCTACTCATGGGAATGGCAGATAAAAACATCCAGTACTACGAGAAGTGCCTTA
CAGCATGGGAGTCAATTATACCACTATTGCAAGACAAGCCAGAGACCAAATAAGAAGTACCTTCATGGACAGTCTAGCA
CTTCTGTGCTCAGTACCACTAGACATACTGGAACTCTATGAAGGTCTCTTTTTTTTTTTTGTCAACTGAGATGCCAGCT
GTGCTCAGGCTGGAACAGACCCTCTGAAGACTATTTGACTTTTTTCCTCATTTTCTTTGTAAACTGGGGTATGTTTCAT
CTTTTTGAGGTATCTTGAATGGTTCCTTCTCTATCCTATGGAGTGACATGGGGCTTATAGTGAAAGTGCATGGGGATCT
TGATAAAACTTACCTCTTTAGCCTGGAAGGAACTGATGAGTAGAACACTAAAAAGATGAAAATAAAACTCTACTGCAAG
GTGCCAAAATGACATCTTTATTGCTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Area Pellucida
Primitive Streak
 
4-6
stage 4
stage 5
stage 5
stage 6
Area Pellucida
Early Mesoderm
Headfold
Notochord
Primitive Streak
Stage 5+.
7-12
stage 7
stage 8
stage 9
stage 10
stage 12
stage 12
Early Mesoderm
Headfold
Heart Tube
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Primitive Streak
Dorsal view.
Ventral view.
13-18
stage 13
stage 18
Eye
Head Mesenchyme
Heart
Heart Tube
Lateral Plate Mesoderm
Limb Buds
Lung
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Spinal Cord
Ventral view.
19-24
stage 19
stage 23
stage 24
Eye
Head Mesenchyme
Heart
Limb Buds
Lung
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
 
25
stage 25
Eye
Head Mesenchyme
Heart
Leg Mesenchyme
Lung
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Somites
Spinal Cord
Widespread Expression
Wing Mesenchyme
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.11940

Mouse

EmageMGI:2443882
EurexpressMGI:2443882
MGI GXDMGI:2443882

Frog

Xenbase944716

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050417-330
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